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Members

Olga López Acevedo,

-Bs. Physics at Université de Strasbourg (France) 2000.
-Master in Statistical Physics, Université de Cergy (France) 2002, 
-PhD in Theoretical Physics, Université de Cergy (France) in 2006,
-Postdoc, University of Jyväskylä (Finland) 2006-2011
-Postdoc, Aalto University (Finland) 2011-2014
-Group Leader and Academy Fellow at Center for Computational Nanoscience Aalto University (Finland) 2014-2018
-Associate Professor, Universidad de Antioquia 2018-present

Research interests:

  • Materials discovery and modeling.
  • Density Functional Theory method developments.


Biography

Olga Lopez Acevedo is currently a Professor in the Physics Institute of Universidad de Antioquia (Colombia). Her research focuses on nanobiomaterials discovery supported by computer simulations. In particular, she is expert in the electronic properties of metal-organic nanomaterials and in the development of computational methods for large scale systems. Previously, she won the young research award Academy of Finland Fellow and was leader of the Computational Soft and Molecular Matter group in the Center of Excellence for Computational Nanosciences COMP in Aalto University (Finland). Since April 2021 she is the new group leader of the Tandem BioTD group.

Selected publications:

Materials discovery and modeling

  • Physical Review Materials 4 (6), 065601 (2020).
  • Journal of Physical Chemistry Letters 9 (16), 4789 (2018).
  • Journal of Physical Chemistry Letters 6 (20), 4061 (2015). 
  • Journal of the American Chemical Society 132 (23), 8210-8218 (2010).
  • Nature chemistry 2 (4), 329 (2010).

 

Method Development

  • Physical Review B 151 (24), 244101 (2019).
  • International Journal of Molecular Sciences  19 (8), 2346 (2018).
  • Journal of Chemical Physics 141 (23), 234102 (2014).

 

Former group Leader: Pilar Cossio

-B.S. Physics, University of Antioquia, Colombia. 2007.
-Ph.D. Physics and Chemistry of Biological Systems. Scuola Internazionale Superiore di Studi Avanzati (SISSA), Trieste, Italy. 2011.
-Postdoc. NIDDK, National Institutes of Health (NIH), Bethesda, USA. 2012 - 2013.
-Postdoc. Dept. of Theoretical Biophysics, 2013 - 2016
Tandem Group Leader. Max Planck Institute of Biophysics / University of Antioquia, Colombia. 2016 - 2021.
-Research Scientist. Center for Computational Mathematics, Flatiron Institute, USA. 2021 - Present.

Selected Publications (in the Tandem Group)

  • J. Giraldo-Barreto S. Ortiz, E H Thiede, K Palacio-Rodriguez, B Carpenter, A H Barnett, P Cossio (2021) Scientific Reports..
  • R. Ochoa, M. Soler, A. Laio, and P. Cossio. (2021) Comput. Phys. Commun. 260, 107716
  • S. Ortiz, L. Stanisic, B. A. Rodriguez, M. Rampp, G. Hummer, and P. Cossio. J. Strut. Biolo. X. 2020.
  • I.Lans, E. Anoz-Carbonell, K. Palacio-Rodriguez, J. A. Ainsa, M. Medina and P. Cossio. PLoS Comput. Biolo. 2020.
  • R. Covino, M. T. Woodside, G. Hummer, A. Szabo, and P. Cossio. J. Chem. Phys. Vol. 151, 154115. 2019. 
  • Palacio-Rodriguez, Lans, Cavasotto, and Cossio. (2019) Scientific Reports, 9 (1), 5142-5156.

 

Postdoc Isaias Lans 

-Bioengineer, University of Antioquia, Colombia, 2009.
-Internship. Biochemistry and Structural Biology Group, University of Texas Medical Branch, USA, 2011.
-Internship. ChEMBL Research Group, EMBL-EBI, United Kingdom, 2012.
-Internship. Global Chemical Information Group, Novartis Institute for    Biomedical Research (NIBR), Switzerland, 2013.
-MSc in Basic Biomedical Sciences (Emphasis in Bioinformatics), University of Antioquia, Colombia, 2013.
-Internship. International School of Advanced Studies, SISSA, Italy, 2017.
-PhD student in Chemical Sciences, Biophysics of Tropical Diseases, MaxPlanck Tandem Group, University of Antioquia, Colombia - Present

Selected Publications

Project: Optimization and application of a computational peptide-design protocol
 

Master student: Cristian Alirio Parra.
Background: Bsc Physics UdeA, 2020.
Project: Optical properties of nanosensors and antimalarials.

Master student: Daniel Sucerquia.
Background: Bsc Physics UdeA, 2019.
Project: Ab-initio metadynamics simulation of nano-biomaterials.

Master student: Kelly Yohana Muñoz Gomez.
Background: Bsc Physics UdeA, 2020.
Project: Optimization of a peptide design protocol for using non-natural amino acids.

Master student: Julian David Giraldo Barreto
Background: Bsc Physics UdeA, 2020
Project: Código para el estudio de sistemas macromoleculares usando imágenes cryo-EM  

Master student: Cristian Camilo Rocha.
Background: Bsc Chemistry, Universidad del Quindío 2017.
Project: Mechanistic study of membrane-pore formation for one new Croatolicidin-derived peptide as therapeutic against Staphylococcus aureus.

Young Researchers:

David Silva Sanchez
Background: Undergradutate Physics student UdeA
Project: Implementación de datos de microscopía electrónica criogénica en variables colectivas para simulaciones de dinámica molecular con metadinámica

Victor Oviedo
Background: Undergradutate Physics student UdeA
Project: Development of orbital-free multiscale method

Ana Cristina Molina Taborda
Background: Undergraduate Physics student UdeA
Project: Molecular optimization with Machine Learning

Alumni

  • Karen Palacio, MSc 2019
  • Sebastian Ortiz, Msc 2020
  • Isais Lanz, Postdoc
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